Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs17159970 chr10:935601 T/C 7.35E-8 506 21.85 24.37 14.15 KM Plot
LGG rs17418324 chr9:37921712 G/A 0 501 22.67 22.87 3.92 KM Plot
LGG rs17429033 chr3:111710398 C/T 0 509 3.77 27.25 21.7 KM Plot
LGG rs17439509 chr9:38016419 A/C 3.7E-6 509 22.73 20.92 5.03 KM Plot
LGG rs17444719 chr3:190102803 G/T 1.28E-5 509 21.7 27.02 17.9 KM Plot
LGG rs17497438 chr1:202790716 G/A 3.41E-5 497 22.6 19.6 5.12 KM Plot
LGG rs17532776 chr8:6183982 C/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs17532867 chr8:6184055 A/C 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs17532985 chr8:6184108 G/C 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs17543833 chr6:53125994 G/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs17543881 chr6:53126116 A/G 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs17543931 chr6:53126837 G/A 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs17544110 chr6:53130222 T/C 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs17544187 chr6:53131343 T/G 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs17544464 chr6:53148019 T/C 2.4E-5 509 22.58 22.23 14.8 KM Plot